Running an Amazon business is hard enough without playing accountant on top of everything else. You’ve got returns to manage, fees to reconcile, and tax deadlines to hit, all while trying to grow your business.
That’s where Amazon accounting software comes in. The right tool doesn’t just organize your transactions, it saves time, reduces errors, and gives you a clearer view of your profits, even with all of Amazon’s moving parts.
I’ve spent hours testing and researching dozens of accounting tools to find the ones that actually work for Amazon sellers. Whether you’re just getting started or scaling fast, these are the five best Amazon accounting software options worth considering in 2025.
The 5 best accounting software for Amazon sellers
- Xero for best all-around Amazon accounting tool
- Sellerise for best dedicated Amazon accounting software
- Zoho Books for best budget-friendly accounting software for Amazon sellers
- Quickbooks Online for best Amazon accounting software for advanced users
- Sage 50 for best accounting software for multiplatform sellers
What makes the best Amazon accounting software?
Amazon sellers don’t have time to wrestle with clunky spreadsheets or cobble together numbers from five different dashboards. Your margins are tight, inventory moves fast, and Amazon’s ever-changing fee structure doesn’t make things any easier. So, when it comes to choosing the right accounting software for Amazon sellers, the tool has to do more than just “keep the books.” It needs to be built—or at least fully optimized—for the unique needs of e-commerce sellers.
During our research, we didn’t just look for generic small-business accounting tools. We focused on software that understands how Amazon works and offers the features, automation, and insights sellers actually need to stay profitable and compliant. Here’s what we looked for when narrowing down the top contenders:
- Ideal for solo sellers and small teams: We focused on tools that meet the needs of Amazon sellers running small to mid-sized operations. Whether you’re managing everything solo or have a small team, these platforms offer the right balance of functionality, flexibility, and price—without being overkill or built solely for larger businesses.
- Ease of Use: Your accounting software should work with you, not against you. We prioritized platforms that are intuitive, clean, and easy to navigate—even for sellers without a background in finance. The best tools make setup simple, minimize jargon, and help you get to the numbers you need without digging through a maze of menus.
- Automation and Time Savings: Amazon sellers juggle enough already. The best accounting software automates tedious tasks like transaction imports, sales tax calculations, and monthly reconciliations. We looked for tools that reduce manual entry, free up your time, and have solutions (whether native or third-party) for integrating with Seller Central.
- Scalability: Whether you’re just starting out or doing six figures a month, your accounting needs will evolve. We chose software that grows with your business, offering flexible plans, multi-user access, and advanced features that won’t leave you shopping for a replacement in a year.
- Customer Support: When things break, or when you simply have a question, you need help fast. We gave high marks to platforms with responsive, knowledgeable support teams, live chat options, and active user communities. Clear documentation and easy-to-follow tutorials were also a big plus.
Your quick guide to the best accounting software for Amazon sellers
| Key Feature | Free Trial | Pricing | |
| Xero | Strong automation tools and bank feeds | 30-day free trial | Starts at $20/month |
| Sellerise | Native Amazon software with many additional tools | 7-day free trial | Starts at $19.99/month |
| Zoho Books | Full-featured accounting at a budget-friendly price | 14-day free trial + free plan available | Starts at $20/month |
| Quickbooks | In-depth onboarding features with excellent customer support | 30-day free trial | Starts at $35/month |
| Sage 50 | Advanced and customizable reporting features | 30-day free trial | Starts at $61.92/month |
The best all-around Amazon accounting tool
Xero
Xero Pros:
- Excellent UI / Intuitive design
- Unlimited users with every plan
- Affordable pricing plans
Xero Cons:
- Expense claims are not included until the highest price tier
- Requires a third-party tool for Amazon integration
If you’ve been poking around in the world of small business finance, there’s a good chance you’ve already heard of Xero, and for good reason. This cloud-based accounting software has earned its reputation as one of the best all-around tools for entrepreneurs, and it’s just as relevant for Amazon sellers juggling the chaos of inventory, expenses, and sales tax. What makes Xero stand out is how many features it offers without breaking the bank.
Starting at just $20 per month, Xero’s Early plan is built with solopreneurs in mind. It includes key features like bank reconciliation, bill capture, sales tax calculations, and basic analytics tools. The interface is surprisingly friendly for non-accountants, replacing confusing jargon with plain English like “bills you need to pay” and “invoices owed to you.” If you’ve ever felt intimidated by accounting software, that small change alone can be a breath of fresh air.
The real draw, though, is in the scalability. Every plan allows unlimited users, so whether you’re working solo or growing a team, you won’t be penalized for adding collaborators. You also get access to a customizable dashboard, file storage, and integrations with tools like Stripe, PandaDoc, Pipedrive, and dozens more. To sync your Seller Central data, you’ll need to connect a third-party tool like A2X, Link My Books, or Synder, which is fairly common in this space.
While the learning curve is a touch steeper than with entry-level platforms like Zoho Books, most sellers find it easier to navigate than QuickBooks once they’re past the initial setup. And if you need help? Xero has a solid knowledge base and video tutorials, plus callback support if you ever get stuck.
One thing to keep in mind: expense claims aren’t included until you hit the highest-tier Established plan, and payroll is an optional add-on through Gusto (which starts at $40/month plus $6 per employee). Still, for Amazon sellers who want powerful accounting tools without QuickBooks pricing, Xero brings a ton of value to the table—and keeps things surprisingly user-friendly while doing it.
Free Trial: Xero offers a 30-day free trial with no credit card or payment info required.
Pricing: Plans start at $20/month for the Early plan. This includes sales tax calculations, basic financial reports, and several additional features.
The best dedicated Amazon accounting software
Sellerise
Sellerise Pros:
- Wide range of finance and analytics tools
- Very budget-friendly pricing
- Exceptional customer service and help resources
Sellerise Cons:
- Fewer advanced features for larger businesses
Sellerise
If you’re looking for a tool built specifically for Amazon sellers, Sellerise is our recommended choice. Unlike general accounting software like Xero or QuickBooks, Sellerise is a dedicated, all-in-one Amazon tool kit. While it doesn’t offer the deep accounting features of traditional platforms, what it does offer is tailor-made for sellers who want an affordable, streamlined way to stay on top of their finances without drowning in complexity.
Starting at just $19.99 per month, Sellerise is surprisingly budget-friendly, especially considering how many tools it packs in. The software includes a full suite of financial dashboards and reports, letting you monitor everything from net profit and margins to FBA fees, sales, and even product-level profitability. Its Sales and Profit dashboard gives you an at-a-glance view of your key numbers, complete with charts that are actually easy to understand and configure—no accounting degree required.
Additionally, Sellerise includes a clean Profit & Loss report that mirrors what you’d find in Seller Central, a powerful ABC Analysis tool to identify your best (and worst) performing products, and a Payouts section that breaks down exactly where your Amazon disbursements are going. There’s also a Manual Adjustments tool, perfect for tracking one-off expenses like product photography or freelance design work that might otherwise get lost in the shuffle.
And because this software is newer to the market, the interface feels modern and more intuitive than legacy platforms. It’s backed by frequent updates and a deep library of tutorials, so onboarding is pretty painless even if you’re not tech-savvy. Plus, it’s worth noting, that Sellerise includes a ton of extra tools for all aspects of your Amazon business. These include keyword research, review management, FBA reimbursements, inventory alerts, and more.
For sellers just starting out or scaling past that solo-operator phase, Sellerise strikes a sweet balance. It may not replace your accountant, but it gives you a crystal-clear view of your business without overcomplicating things. And as far as Amazon-focused financial tools go, this one’s in a league of its own.
Free Trial: Sellerise offers a 7-day free trial with no credit card or payment info required.
Pricing: Plans start at $19.99/month for the starter plan which includes access to all of the financial tools along with keyword tracking, automated alerts, and additional features.
The best budget-friendly accounting software for Amazon sellers
Zoho Books
Zoho Books Pros:
- Very easy-to-use / Clean design
- Excellent customer support/learning resources
- Free plan available
Zoho Books Cons:
- Requires a third-party tool for Amazon integration
If you’re looking for a cost-effective way to manage your Amazon finances without sacrificing functionality, Zoho Books deserves a spot on your shortlist What makes Zoho Books stand out is its generous pricing. Sellers earning under $50,000 annually can start with a free plan, which is ideal for solo entrepreneurs, side hustlers, or small home-based operations. Even if you’re beyond that early stage, paid plans start at just $15/month when billed annually, making it the most budget-friendly full accounting solution on our list.
As far as functionality, Zoho Books covers all the essentials Amazon sellers need to stay financially organized: real-time invoice tracking, expense categorization, tax calculations, and bank reconciliation. It also offers simple inventory tracking, which can be helpful if you use a third-party warehouse or prep center with your business. The dashboard gives you clear visuals of your receivables, payables, and key expense categories, and you can run reports like profit and loss, cash flow, or balance sheets to keep your accountant happy.
There’s also a mobile app that makes it easy to track expenses and send invoices on the go, and if you run into any trouble, Zoho offers live chat, email, and phone support alongside a solid library of how-to content. It may not have the deep features of Xero or QuickBooks, and there are a few clunky areas—like handling multiple business entities—but overall, Zoho Books delivers serious value for the price.
It’s important to point out, that Zoho doesn’t include a native integration with Seller Central. That means you’ll either need to manually pull data from Seller Central or use a third-party tool like Zapier or Make.com to link the two accounts. This does add an extra cost of around $10-15/month but will drastically speed up your workflow and ensure you have accurate and organized financial data.
Overall, Zoho Books is a great option whether you’re on a tighter budget or just looking to save some money on your accounting software.
Free Trial: Zoho Books offers a 14-day free trial with no credit card or payment info required.
Pricing: Zoho Books offers a 100% free pricing tier which includes standard accounting features and basic reporting. Their paid plans start at $20/month and offer several additional features and access for up to 3 users.
The best Amazon accounting software for advanced users
Quickbooks Online
Quickbooks Pros:
- Very scalable with your business
- Robust feature-set
- Includes integrations for 650+ apps and tools
Quickbooks Cons:
- Steeper learning curve
- We recommend using a third-party tool for Amazon integration
For Amazon sellers looking for an all-in-one accounting solution, you can’t go wrong with Quickbooks. QuickBooks has been the gold standard in small business accounting for decades. Chances are, your accountant already uses it—or at least knows it like the back of their hand.
What sets QuickBooks apart is its wide range of features. You’ll find detailed expense tracking, real-time cash flow analysis, custom reporting, tax management tools, receipt scanning, and even mileage tracking. It also integrates with over 650 third-party apps, including PayPal, Shopify, and many more.
The downside to having so many features is that the learning curve for Quickbooks is steeper than many of the software on this list. In our experience, the more features you unlock, the harder it becomes to navigate and keep track of everything. That said, QuickBooks offers some of the best tutorials, help docs, and customer support out there. If you’re willing to invest a bit of time, you’ll have all the resources you need to get comfortable with this powerful accounting software.
One reason we’re so comfortable recommending Quickbooks is that the program can scale with your business. Whether you’re running one storefront or several, the software can keep up. There are many pricing plans available with each one adding more and more advanced features to optimize your financial management as your business grows.
While Quickbooks is packed with features, it’s important to point out a couple of issues we had with the software. Firstly, some very basic tasks like fixing mistakes or removing duplicate entries are overly complicated and confusing. This can be frustrating, especially when you’re first learning the software. Secondly, it’s important to note that QuickBooks does offer a native app to integrate with Seller Central. However, reviews on this app are mixed and many Amazon sellers prefer to use reliable third-party programs like A2X to link their Quickbooks account with their Seller Central information.
In short, QuickBooks is an excellent accounting software with a bit of a learning curve. While it’s not our first choice for new sellers or smaller businesses it’s a great choice for intermediate to larger sellers looking for a feature-packed, reliable accounting solution.
Free Trial: Quickbooks offers a 30-day free trial once you’ve selected a payment plan.
Pricing: The Simple Start plan is $38/month and includes automated bookkeeping and bank feeds, tax deductions, and more.
The best accounting software for multiplatform sellers
Sage 50
Sage 50 Pros:
- Extremely customizable/in-depth reporting
- Desktop accounting software with cloud integration features
- Many advanced tools for larger businesses
Sage 50 Cons:
- Premium pricing
- Requires a third-party tool for Amazon integration
If you’re selling across multiple platforms, like Amazon, eBay, and Shopify, Sage 50 is a great option. It’s the most powerful accounting software on our list when it comes to customizable, detailed financial reports and multiplatform support.
Sage 50 starts at around $60/month, making it the priciest tool here. But what you get in return is a reporting machine that can spit out virtually any kind of financial or inventory analysis you could imagine. We were very impressed both by the customization and flexibility of Sage’s reporting features as well as the speed at which each report is generated.
This is ideal for Amazon sellers managing multiple sales channels and product lines who want to avoid the headache of cobbling together reports from disconnected platforms. Yes, you’ll need to use a third-party integration like A2X or Zapier to connect Amazon to Sage. But once it’s hooked up, the level of clarity it gives you is unmatched. You’ll see exactly where your money’s coming from, where it’s going, and which parts of your business are driving profit.
That said, Sage 50 isn’t exactly user-friendly, especially for beginners. Its interface feels clunky and outdated compared to many modern platforms like Xero or QuickBooks. On top of that, some of the basics, like invoicing or expense management, aren’t as polished or intuitive as they should be at this price point.
Still, if you’re focused on consolidating financials from multiple sales channels, Sage 50 makes it faster and more efficient than any other platform. Its open API even allows custom-built integrations, so if you’ve got a developer (or hire one), you can tailor the system exactly to your needs.
In our recommendation, Sage 50 is not for casual sellers or startups. But if you’re running a multi-platform Amazon business with serious financial complexity, it’s an investment that can pay off both in time-savings, and in-depth analytics.
Free Trial: Sage 50 offers a 30-day free trial with no credit card or payment info required.
Pricing: The Pro Accounting plan is $69.83 /month and includes their full desktop accounting software with cloud data access.
Which Amazon accounting software is right for you?
Choosing the right accounting software for your Amazon business isn’t just about features—it’s about fit. Whether you’re just starting out or managing multiple sales channels, the right tool will save you time, reduce errors, and give you the clarity you need to make smarter decisions.
We’ve broken down the top options so you can find what works best for your workflow, budget, and growth goals. Now that you’ve got the facts, you’re one step closer to simplifying your back office and focusing on what really matters—scaling your business.
